9QU1
Crystal structure of the human RalGAPA2 N-terminal domain with human kappaB-Ras1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-08-28 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.68879 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 163.564, 63.430, 104.163 |
Unit cell angles | 90.00, 91.26, 90.00 |
Refinement procedure
Resolution | 63.630 - 2.720 |
R-factor | 0.1976 |
Rwork | 0.195 |
R-free | 0.25300 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.529 |
Data reduction software | XDS (BUILT=20220820) |
Data scaling software | Aimless (0.7.7) |
Phasing software | PHASER |
Refinement software | PHENIX (1.21.1_5286) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 104.138 | 2.959 |
High resolution limit [Å] | 2.716 | 2.716 |
Rmerge | 0.114 | 1.202 |
Rmeas | 0.125 | 1.363 |
Rpim | 0.052 | 0.632 |
Number of reflections | 21842 | 1093 |
<I/σ(I)> | 10.2 | |
Completeness [%] | 91.5 | 57.9 |
Redundancy | 5.56 | 4.56 |
CC(1/2) | 0.997 | 0.508 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.4 | 277 | 17 % PEG 3350 20 % glycerol 0.1 M MgCl2 1 ul protei + 1 ul screening buffer + 1 ul seed seed (1:200) |