9EN2
Crystal structure of the metalloproteinase enhancer PCPE-1 complexed with nanobodies VHH-H4 and VHH-I5
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-10 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.977794 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 54.830, 95.945, 110.771 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.000 - 2.200 |
Rwork | 0.208 |
R-free | 0.24216 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | XDS (20210322) |
Data scaling software | Aimless (0.7.7) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.000 | 2.270 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.086 | 1.033 |
Rmeas | 0.107 | |
Rpim | 0.063 | |
Number of reflections | 30184 | 28630 |
<I/σ(I)> | 9.5 | 1.3 |
Completeness [%] | 99.5 | |
Redundancy | 4.8 | |
CC(1/2) | 0.997 | 0.560 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 6.5 | 292.15 | 10% PEG 8000, 50 mM L-argininamide dihydrochloride, 50 mM spermine, 50 mM sodium cacodylate pH 6.5, 50 mM potassium chloride |