9C7A
Crystal structure of R149W neurodevelopmental disease-associated U2AF2 variant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-04-12 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 43.250, 63.131, 77.559 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.780 - 1.400 |
R-factor | 0.1317 |
Rwork | 0.130 |
R-free | 0.15910 |
Structure solution method | FOURIER SYNTHESIS |
Data reduction software | XDS (Jan 31, 2020) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHENIX (1.20.1) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.780 | 1.420 |
High resolution limit [Å] | 1.400 | 1.400 |
Rmerge | 0.051 | 0.574 |
Rpim | 0.022 | 0.306 |
Number of reflections | 80344 | 1953 |
<I/σ(I)> | 16.2 | 2 |
Completeness [%] | 99.6 | 95 |
Redundancy | 6.4 | 4.3 |
CC(1/2) | 0.999 | 0.765 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 277.15 | 24 M sodium malonate pH 7.0, 5% w/v sucrose, 25% w/v PEG 3350, with addition of 0.1 uL of 5% w/v LDAO detergent |