8YAT
SOD1, Nanobody1, Nanobody2 and Nanobody3 complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL02U1 |
Synchrotron site | SSRF |
Beamline | BL02U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-12-09 |
Detector | DECTRIS EIGER2 X 4M |
Wavelength(s) | 0.9791 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 377.129, 46.672, 156.949 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 80.820 - 3.940 |
R-factor | 0.3082 |
Rwork | 0.303 |
R-free | 0.36770 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.571 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 80.820 | 4.150 |
High resolution limit [Å] | 3.940 | 3.940 |
Rmerge | 0.541 | 1.304 |
Rmeas | 0.564 | 1.356 |
Rpim | 0.156 | 0.369 |
Total number of observations | 331414 | 49500 |
Number of reflections | 25865 | 3680 |
<I/σ(I)> | 5.6 | 2.4 |
Completeness [%] | 99.9 | |
Redundancy | 12.8 | 13.5 |
CC(1/2) | 0.981 | 0.818 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | 0.2M Ammonium sulfate, 0.1M HEPES pH8.0, 20%w/v Polyethylene glycol 3350 |