8U15
The ternary complex structure of DDB1-CRBN-SALL4(ZF1,2)-short bound to CC-220
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-11-26 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 1 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 110.729, 95.727, 150.947 |
Unit cell angles | 90.00, 91.72, 90.00 |
Refinement procedure
Resolution | 61.480 - 2.950 |
R-factor | 0.2222 |
Rwork | 0.220 |
R-free | 0.27200 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.516 |
Data reduction software | XDS |
Data scaling software | pointless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 95.730 | 3.020 |
High resolution limit [Å] | 2.950 | 2.950 |
Rmerge | 0.104 | 2.947 |
Rmeas | 0.339 | 3.177 |
Rpim | 0.128 | 1.182 |
Total number of observations | 462088 | 32233 |
Number of reflections | 66770 | 4494 |
<I/σ(I)> | 5.1 | 0.8 |
Completeness [%] | 100.0 | |
Redundancy | 6.9 | 7.2 |
CC(1/2) | 0.986 | 0.345 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.2M Sodium malonate, 20% PEG 3350 |