8TT8
Joint Xray/Neutron structure of Macrophage Migration Inhibitory Factor (MIF) Bound to 4-hydroxyphenylpyruvate at room temperature
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU MICROMAX-007 HF |
| Temperature [K] | 293 |
| Detector technology | PIXEL |
| Collection date | 2017-07-10 |
| Detector | DECTRIS EIGER R 4M |
| Wavelength(s) | 1.54148 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 68.613, 69.231, 89.185 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 17.620 - 2.530 |
| R-factor | 0.2214 |
| Rwork | 0.219 |
| R-free | 0.27050 |
| Structure solution method | FOURIER SYNTHESIS |
| RMSD bond length | 0.098 |
| RMSD bond angle | 1.570 |
| Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 54.690 | 2.590 | 1.780 |
| High resolution limit [Å] | 1.750 | 2.500 | 1.750 |
| Rmerge | 0.086 | 0.349 | 0.586 |
| Rmeas | 0.101 | 0.398 | 0.649 |
| Rpim | 0.044 | 0.181 | 0.310 |
| Number of reflections | 43601 | 964 | 2366 |
| <I/σ(I)> | 10.4 | 2.2 | 2.6 |
| Completeness [%] | 100.0 | 67 | 100 |
| Redundancy | 4.7 | 3.4 | 4.6 |
| CC(1/2) | 0.988 | 0.679 | 0.770 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7.4 | 295 | Protein: 1 mM MIF, 10 mM deuterated HPP, 20 mM NaCl in 20 mM Tris (pH 7.4) mixed 1:1 with reservoir containing 2M (NH4)2SO4, 1% isopropanol in 100 mM Tris (pH 7.4). |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7.4 | 295 | Protein: 1 mM MIF, 10 mM deuterated HPP, 20 mM NaCl in 20 mM Tris (pH 7.4) mixed 1:1 with reservoir containing 2M (NH4)2SO4, 1% isopropanol in 100 mM Tris (pH 7.4). |






