8TE1
Crystal structure of the methyltransferase domain of R882H/R676K DNMT3A homotetramer
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.3 |
Synchrotron site | ALS |
Beamline | 5.0.3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2021-10-27 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97648 |
Spacegroup name | P 3 |
Unit cell lengths | 177.829, 177.829, 110.920 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 47.060 - 2.480 |
R-factor | 0.1929 |
Rwork | 0.193 |
R-free | 0.22570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5yx2 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.570 |
High resolution limit [Å] | 2.480 | 5.340 | 2.480 |
Rmerge | 0.155 | 0.045 | 1.930 |
Rmeas | 0.170 | 0.050 | 2.129 |
Rpim | 0.071 | 0.021 | 0.896 |
Total number of observations | 803976 | ||
Number of reflections | 138899 | 13898 | 13907 |
<I/σ(I)> | 4.1 | ||
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 5.8 | 5.8 | 5.6 |
CC(1/2) | 0.999 | 0.302 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 0.2-0.4 M potassium sodium tartrate |