8T5B
HIV-1 Integrase Catalytic Core Domain and C-Terminal Domain in Complex with Allosteric Integrase Inhibitor EKC-110
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2022-09-16 |
Detector | RDI CMOS_8M |
Wavelength(s) | 0.9774 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 61.954, 69.984, 63.858 |
Unit cell angles | 90.00, 100.73, 90.00 |
Refinement procedure
Resolution | 46.720 - 2.080 |
R-factor | 0.2416 |
Rwork | 0.240 |
R-free | 0.26470 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 8a1q |
RMSD bond length | 0.003 |
RMSD bond angle | 0.603 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.720 | 2.154 |
High resolution limit [Å] | 2.080 | 2.080 |
Rmerge | 0.069 | 0.996 |
Rmeas | 0.098 | 1.408 |
Rpim | 0.069 | 0.996 |
Number of reflections | 31574 | 2807 |
<I/σ(I)> | 6.22 | 0.52 |
Completeness [%] | 97.2 | 84.72 |
Redundancy | 1.9 | |
CC(1/2) | 0.997 | 0.320 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 295 | 10% (wt/vol) PEG 8,000, 20% ethylene glycol, 30 mM MgCl2, 30 mM CaCl2, and 0.1 M imidazole-MES (pH 6.5) |