8SPN
Crystal structure of macrophage migration inhibitory factor in complex with T614
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-12-08 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.677, 67.944, 88.371 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.180 - 1.730 |
R-factor | 0.1752 |
Rwork | 0.174 |
R-free | 0.20246 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.027 |
RMSD bond angle | 2.371 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.760 |
High resolution limit [Å] | 1.730 | 4.690 | 1.730 |
Rmerge | 0.036 | 0.118 | |
Rmeas | 0.054 | 0.042 | 0.138 |
Rpim | 0.026 | 0.022 | 0.069 |
Number of reflections | 43220 | 2345 | 2119 |
<I/σ(I)> | 16.6 | ||
Completeness [%] | 99.5 | 98.8 | 98.2 |
Redundancy | 3.9 | 3.4 | 3.6 |
CC(1/2) | 0.995 | 0.976 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 2 M ammonium sulfate, 3 % 2-propanol, 0.1 M Tris-HCl, pH 7.5 |