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8RIY

Human NUDT5 with ibrutinib derivative

This is a non-PDB format compatible entry.
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2022-04-13
DetectorDECTRIS EIGER X 4M
Wavelength(s)0.9762
Spacegroup nameP 61 2 2
Unit cell lengths60.605, 60.605, 502.608
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution83.768 - 2.288
Rwork0.226
R-free0.29480
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.005
RMSD bond angle1.374
Data reduction softwareDIALS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0267)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]83.7682.646
High resolution limit [Å]2.2882.288
Rmerge0.3352.541
Number of reflections9387469
<I/σ(I)>10.31.8
Completeness [%]85.8
Redundancy35.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION2770.2 M ammonium acetate, 0.1 M citrate pH 5.5, 30 % PEG4000

221716

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