8IFO
Crystal structure of estrogen related receptor-gamma DNA binding domain complexed with Pla2g12b promoter
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-09 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9785 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 77.403, 74.434, 111.020 |
Unit cell angles | 90.00, 104.98, 90.00 |
Refinement procedure
Resolution | 44.290 - 2.200 |
R-factor | 0.22041 |
Rwork | 0.219 |
R-free | 0.26001 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.651 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 53.620 | 2.270 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.084 | 0.509 |
Rmeas | 0.091 | 0.557 |
Rpim | 0.036 | 0.223 |
Total number of observations | 199080 | 16364 |
Number of reflections | 30806 | 2668 |
<I/σ(I)> | 9.8 | 2.7 |
Completeness [%] | 99.2 | |
Redundancy | 6.5 | 6.1 |
CC(1/2) | 0.994 | 0.962 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | 0.1 M Sodium malonate pH 6.0, 12% w/v Polyethylene glycol 3,350 |