8HB5
Crystal structure of Mincle in complex with HD-275
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-1A |
Synchrotron site | Photon Factory |
Beamline | BL-1A |
Temperature [K] | 95 |
Detector technology | PIXEL |
Collection date | 2022-06-04 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 1.0344 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 97.515, 97.515, 46.490 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.760 - 2.600 |
R-factor | 0.2977 |
Rwork | 0.296 |
R-free | 0.33560 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4zrw |
RMSD bond length | 0.002 |
RMSD bond angle | 0.527 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.760 | 2.720 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.379 | 3.705 |
Rpim | 0.054 | 0.530 |
Number of reflections | 8053 | 8053 |
<I/σ(I)> | 14.1 | |
Completeness [%] | 100.0 | 100 |
Redundancy | 50.3 | 50.5 |
CC(1/2) | 0.997 | 0.878 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 0.1M immidazole (pH 8.0), 0.2M sodium acetate trihydrate, 10% PEG8,000 |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 0.1M immidazole (pH 8.0), 0.2M sodium acetate trihydrate, 10% PEG8,000 |