8HB5
Crystal structure of Mincle in complex with HD-275
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | PHOTON FACTORY BEAMLINE BL-1A |
| Synchrotron site | Photon Factory |
| Beamline | BL-1A |
| Temperature [K] | 95 |
| Detector technology | PIXEL |
| Collection date | 2022-06-04 |
| Detector | DECTRIS EIGER X 4M |
| Wavelength(s) | 1.0344 |
| Spacegroup name | P 31 2 1 |
| Unit cell lengths | 97.515, 97.515, 46.490 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 48.760 - 2.600 |
| R-factor | 0.2977 |
| Rwork | 0.296 |
| R-free | 0.33560 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4zrw |
| RMSD bond length | 0.002 |
| RMSD bond angle | 0.527 |
| Data reduction software | XDS |
| Data scaling software | Aimless |
| Phasing software | MOLREP |
| Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 48.760 | 2.720 |
| High resolution limit [Å] | 2.600 | 2.600 |
| Rmerge | 0.379 | 3.705 |
| Rpim | 0.054 | 0.530 |
| Number of reflections | 8053 | 8053 |
| <I/σ(I)> | 14.1 | |
| Completeness [%] | 100.0 | 100 |
| Redundancy | 50.3 | 50.5 |
| CC(1/2) | 0.997 | 0.878 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 0.1M immidazole (pH 8.0), 0.2M sodium acetate trihydrate, 10% PEG8,000 |
| 1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 0.1M immidazole (pH 8.0), 0.2M sodium acetate trihydrate, 10% PEG8,000 |






