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8HB5

Crystal structure of Mincle in complex with HD-275

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-1A
Synchrotron sitePhoton Factory
BeamlineBL-1A
Temperature [K]95
Detector technologyPIXEL
Collection date2022-06-04
DetectorDECTRIS EIGER X 4M
Wavelength(s)1.0344
Spacegroup nameP 31 2 1
Unit cell lengths97.515, 97.515, 46.490
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution48.760 - 2.600
R-factor0.2977
Rwork0.296
R-free0.33560
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4zrw
RMSD bond length0.002
RMSD bond angle0.527
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwareMOLREP
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.7602.720
High resolution limit [Å]2.6002.600
Rmerge0.3793.705
Rpim0.0540.530
Number of reflections80538053
<I/σ(I)>14.1
Completeness [%]100.0100
Redundancy50.350.5
CC(1/2)0.9970.878
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP82930.1M immidazole (pH 8.0), 0.2M sodium acetate trihydrate, 10% PEG8,000
1VAPOR DIFFUSION, SITTING DROP82930.1M immidazole (pH 8.0), 0.2M sodium acetate trihydrate, 10% PEG8,000

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