8H53
Human asparaginyl-tRNA synthetase in complex with asparagine-AMP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-07-03 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9796 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 115.423, 125.842, 161.134 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.880 - 2.160 |
R-factor | 0.205 |
Rwork | 0.203 |
R-free | 0.23680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5xix |
RMSD bond length | 0.003 |
RMSD bond angle | 0.573 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.200 |
High resolution limit [Å] | 2.160 | 2.160 |
Number of reflections | 126122 | 6260 |
<I/σ(I)> | 12.3 | 2.1 |
Completeness [%] | 100.0 | |
Redundancy | 7.4 | |
CC(1/2) | 0.993 | 0.868 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 40 mM potassium phosphate, 20% (v/v) glycerol, 16% (w/v) polyethylene glycol 8,000 |