8GJU
Crystal structure of human methylmalonyl-CoA mutase (MMUT) in complex with methylmalonic acidemia type A protein (MMAA), coenzyme A, and GDP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2021-11-02 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.033 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 95.806, 221.872, 121.824 |
Unit cell angles | 90.00, 105.53, 90.00 |
Refinement procedure
Resolution | 80.620 - 2.790 |
R-factor | 0.2315 |
Rwork | 0.229 |
R-free | 0.27610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2www |
RMSD bond length | 0.004 |
RMSD bond angle | 0.633 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 117.000 | 3.074 |
High resolution limit [Å] | 2.700 | 2.794 |
Rmerge | 0.137 | 0.775 |
Rpim | 0.092 | 0.504 |
Number of reflections | 74830 | 2737 |
<I/σ(I)> | 5.2 | |
Completeness [%] | 89.0 | |
Redundancy | 3.1 | |
CC(1/2) | 0.991 | 0.562 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | Morpheus1-F11 (Molecular Dimensions): 120 mM monosaccharides mix, 100 mM buffer system 3, pH 8.5, 30% precipitant mix 3 |