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8EPC

Crystal structure of human coagulation factor IXa (S195A), apo-form

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2020-10-13
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.97918
Spacegroup nameP 31 2 1
Unit cell lengths67.975, 67.975, 109.820
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution58.870 - 2.510
R-factor0.2337
Rwork0.231
R-free0.28070
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5jb9
RMSD bond length0.004
RMSD bond angle0.968
Data reduction softwareXDS
Data scaling softwareAimless (0.5.32)
Phasing softwarePHASER (2.8.3)
Refinement softwareREFMAC (5.8.0267)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]58.87058.8702.610
High resolution limit [Å]2.5109.0502.510
Rmerge0.0470.0260.861
Rmeas0.0540.0300.988
Rpim0.0260.0150.470
Total number of observations9674773
Number of reflections104052681140
<I/σ(I)>17.244.71.6
Completeness [%]99.197.398
Redundancy4.33.64.2
CC(1/2)0.9990.9990.618
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
de9soakapt_a5_1VAPOR DIFFUSION, SITTING DROP29840% Glycerol Ethoxylate

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PDB entries from 2024-11-13

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