8EO6
Crystal structure of metagenomic class A beta-lactamase precursor LRA-5 in complex with ceftazidime at 2.35 Angstrom resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 2 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-10-16 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.980112 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 74.080, 162.110, 70.270 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.660 - 2.350 |
R-factor | 0.1968 |
Rwork | 0.196 |
R-free | 0.21600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1e25 |
RMSD bond length | 0.006 |
RMSD bond angle | 1.036 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX (1.19.2_4158) |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.660 | 2.490 |
High resolution limit [Å] | 2.350 | 2.350 |
Rmeas | 0.283 | 2.330 |
Number of reflections | 36200 | 5654 |
<I/σ(I)> | 11.78 | 1.62 |
Completeness [%] | 99.7 | 98.1 |
Redundancy | 13.4 | 12.72 |
CC(1/2) | 0.997 | 0.495 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 10.5 | 294 | 1.6 M sodium formate |