8EB0
RNF216/E2-Ub/Ub transthiolation complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-03-31 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.95372 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 152.545, 70.363, 65.152 |
Unit cell angles | 90.00, 108.70, 90.00 |
Refinement procedure
Resolution | 41.370 - 3.030 |
R-factor | 0.3062 |
Rwork | 0.303 |
R-free | 0.33890 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PDB entries 7M4O 1ubq 4q5e & 7M4M AlphaFold model |
RMSD bond length | 0.002 |
RMSD bond angle | 0.486 |
Data reduction software | XDS (Nov 1, 2016 BUILT=20161205) |
Data scaling software | Aimless (version 0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.640 | 3.210 |
High resolution limit [Å] | 3.030 | 3.030 |
Rmerge | 0.111 | 0.979 |
Number of reflections | 12690 | 1986 |
<I/σ(I)> | 5.6 | 0.9 |
Completeness [%] | 98.4 | |
Redundancy | 3.4 | |
CC(1/2) | 0.994 | 0.533 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.9 | 293 | 2 M ammonium sulfate |