8E4F
Crystal structure of dihydrofolate reductase (DHFR) from the filarial nematode W. bancrofti in complex with NADPH and folate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-04-29 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.00 |
Spacegroup name | P 63 2 2 |
Unit cell lengths | 133.877, 133.877, 75.876 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 29.610 - 2.470 |
R-factor | 0.212 |
Rwork | 0.211 |
R-free | 0.23310 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2fzj |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.21) |
Phasing software | PHASER |
Refinement software | PHENIX (1.17_3644) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.610 | 29.610 | 2.540 |
High resolution limit [Å] | 2.470 | 11.050 | 2.470 |
Rmerge | 0.164 | 0.055 | 1.006 |
Rmeas | 0.167 | 0.056 | 1.021 |
Rpim | 0.027 | 0.010 | 0.170 |
Total number of observations | 571238 | 6302 | 34952 |
Number of reflections | 14828 | 198 | 1039 |
<I/σ(I)> | 24.8 | 64.5 | 4.5 |
Completeness [%] | 99.7 | 95 | 96.4 |
Redundancy | 38.5 | 31.8 | 33.6 |
CC(1/2) | 0.999 | 1.000 | 0.896 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277.15 | 100 mM trisodium citrate pH (5.4-6.4), 25% w/v PEG 4000, and 200 mM ammonium sulfate |