8DNN
Crystal structure of neutralizing antibody 80 in complex with SARS-CoV-2 receptor binding domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2021-10-16 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.033167 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 85.110, 111.580, 187.080 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.910 - 3.120 |
R-factor | 0.1955 |
Rwork | 0.193 |
R-free | 0.25200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7lm8 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.626 |
Data reduction software | XPREP |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.910 | 3.231 |
High resolution limit [Å] | 3.120 | 3.120 |
Number of reflections | 32395 | 44891 |
<I/σ(I)> | 6.03 | |
Completeness [%] | 99.8 | 99.97 |
Redundancy | 13.6 | |
CC(1/2) | 0.984 | 0.615 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2M di-ammonium tartarate, 20% (w/v) polyethylene glycol 3350 |