8DIZ
Crystal structure of NavAb I119T as a basis for the human Nav1.7 Inherited Erythromelalgia I234T mutation
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.2 |
Synchrotron site | ALS |
Beamline | 8.2.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-11-07 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.0 |
Spacegroup name | I 4 2 2 |
Unit cell lengths | 124.760, 124.760, 192.426 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.110 - 2.750 |
R-factor | 0.2281 |
Rwork | 0.227 |
R-free | 0.25460 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3rvy |
RMSD bond length | 0.008 |
RMSD bond angle | 1.046 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1-4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.850 |
High resolution limit [Å] | 2.750 | 2.750 |
Rmerge | 0.156 | 1.318 |
Rpim | 0.044 | 0.592 |
Number of reflections | 20054 | 929 |
<I/σ(I)> | 16.5 | 0.6 |
Completeness [%] | 99.4 | 93 |
Redundancy | 12.7 | 4.6 |
CC(1/2) | 0.997 | 0.405 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.6 | 277 | 1.8-1.9 M Ammonium Sulfate 0.1 M Sodium Citrate pH 4.6 |