8CES
Crystal structure of monkeypox virus methyltransferase VP39 in complex with inhibitor TO500
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-01-11 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 51.606, 84.055, 154.054 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.930 - 2.500 |
R-factor | 0.238 |
Rwork | 0.236 |
R-free | 0.28180 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.005 |
RMSD bond angle | 0.692 |
Data reduction software | XDS (xdsapp v3.0) |
Data scaling software | XDS (xdsapp v3.0) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20_4459) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.930 | 2.589 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.190 | 1.239 |
Rmeas | 0.207 | 1.365 |
Rpim | 0.081 | 0.553 |
Number of reflections | 22141 | 1864 |
<I/σ(I)> | 8.47 | 1.27 |
Completeness [%] | 91.1 | 78.45 |
Redundancy | 6.2 | 5.5 |
CC(1/2) | 0.990 | 0.558 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 200 mM lithium citrate, 14.5% (w/v) PEG 3350 |