8A5K
Structural analysis of 1-deoxy-D-xylulose 5-phosphate synthase from Pseudomonas aeruginosa and Klebsiella pneumoniae reveals conformational changes upon cofactor binding
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-05-02 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 0.97 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 116.819, 137.065, 231.445 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.920 - 2.300 |
R-factor | 0.1855 |
Rwork | 0.183 |
R-free | 0.23810 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ouv |
RMSD bond length | 0.008 |
RMSD bond angle | 0.947 |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.920 | 2.455 |
High resolution limit [Å] | 2.300 | 2.370 |
Rmerge | 0.169 | 1.477 |
Number of reflections | 194080 | 14427 |
<I/σ(I)> | 8.58 | |
Completeness [%] | 99.6 | |
Redundancy | 6.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291.15 | 100 mM HEPES, 12% PEG-8000 and 200 mM calcium acetate |