8A0G
Human deoxyhypusine synthase with trapped transition state
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.3 |
Synchrotron site | BESSY |
Beamline | 14.3 |
Temperature [K] | 293 |
Detector technology | PIXEL |
Collection date | 2021-12-15 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.895 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 106.950, 106.950, 161.380 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 46.520 - 1.840 |
R-factor | 0.1475 |
Rwork | 0.147 |
R-free | 0.16410 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6xxj |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.520 | 46.520 | 1.950 |
High resolution limit [Å] | 1.840 | 5.480 | 1.840 |
Rmerge | 0.192 | 0.062 | 1.967 |
Rmeas | 0.203 | 0.066 | 2.072 |
Total number of observations | 922420 | ||
Number of reflections | 93129 | 3764 | 14866 |
<I/σ(I)> | 8.58 | 30 | 0.97 |
Completeness [%] | 99.9 | 99.6 | 99.5 |
Redundancy | 9.905 | 8.953 | 10.101 |
CC(1/2) | 0.997 | 0.998 | 0.549 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 20 mg/ml protein solution was mixed with equal volume of mother liquor consisting of 0.025-0.125 mM carboxylic acid mix, 30-60% precipitant mix, PEG 1000, PEG 3350 and 100 mM Tris-Bicine pH 8.5. |