8EDF
Bovine Fab SKD in complex with Sars COV-2 receptor binding domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-1 |
Synchrotron site | SSRL |
Beamline | BL12-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-01-19 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.97946 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 162.841, 162.841, 125.171 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 26.740 - 3.400 |
R-factor | 0.2771 |
Rwork | 0.276 |
R-free | 0.29940 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6oo0 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.641 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 26.740 | 3.550 |
High resolution limit [Å] | 3.400 | 3.400 |
Rmerge | 0.287 | 2.390 |
Rmeas | 0.318 | 2.650 |
Rpim | 0.135 | 1.120 |
Number of reflections | 23014 | 1145 |
<I/σ(I)> | 5.8 | 0.69 |
Completeness [%] | 96.6 | 99.6 |
Redundancy | 5 | 5.1 |
CC(1/2) | 0.726 | 0.403 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.2 | 293.15 | 0.4M Lithium chloride, 10% Peg6000, 0.1M sodium citrate |