Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8EB0

RNF216/E2-Ub/Ub transthiolation complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAUSTRALIAN SYNCHROTRON BEAMLINE MX2
Synchrotron siteAustralian Synchrotron
BeamlineMX2
Temperature [K]100
Detector technologyPIXEL
Collection date2021-03-31
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.95372
Spacegroup nameC 1 2 1
Unit cell lengths152.545, 70.363, 65.152
Unit cell angles90.00, 108.70, 90.00
Refinement procedure
Resolution41.370 - 3.030
R-factor0.3062
Rwork0.303
R-free0.33890
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)PDB entries 7M4O 1ubq 4q5e & 7M4M AlphaFold model
RMSD bond length0.002
RMSD bond angle0.486
Data reduction softwareXDS (Nov 1, 2016 BUILT=20161205)
Data scaling softwareAimless (version 0.7.4)
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.6403.210
High resolution limit [Å]3.0303.030
Rmerge0.1110.979
Number of reflections126901986
<I/σ(I)>5.60.9
Completeness [%]98.4
Redundancy3.4
CC(1/2)0.9940.533
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.92932 M ammonium sulfate

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon