8DRZ
Product structure of SARS-CoV-2 Mpro C145A mutant in complex with nsp13-nsp14 (C13) cut site sequence
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-06-21 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.9774 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 105.944, 216.821, 121.255 |
Unit cell angles | 90.00, 94.01, 90.00 |
Refinement procedure
Resolution | 47.500 - 1.980 |
R-factor | 0.1792 |
Rwork | 0.177 |
R-free | 0.22330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7joy |
Data scaling software | Aimless (0.7.7) |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.500 | 47.500 | 2.010 |
High resolution limit [Å] | 1.980 | 10.840 | 1.980 |
Rmerge | 0.134 | 0.023 | 2.026 |
Rmeas | 0.147 | 0.025 | 2.229 |
Rpim | 0.059 | 0.010 | 0.919 |
Total number of observations | 1157133 | 6859 | 53894 |
Number of reflections | 188635 | 1168 | 9317 |
<I/σ(I)> | 10.7 | 57.1 | 0.9 |
Completeness [%] | 100.0 | 98.6 | 100 |
Redundancy | 6.1 | 5.9 | 5.8 |
CC(1/2) | 0.998 | 1.000 | 0.306 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1M Na citrate (pH 5.6), 16% PEG 2K |