8DJG

ADGRL3-lectin domain in complex with an activating synthetic antibody fragment

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	APS BEAMLINE 23-ID-B
Synchrotron site	APS
Beamline	23-ID-B
Temperature [K]	100
Detector technology	PIXEL
Collection date	2021-06-30
Detector	DECTRIS EIGER X 16M
Wavelength(s)	1.033
Spacegroup name	P 21 21 21
Unit cell lengths	81.799, 97.849, 163.058
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	47.510 - 2.650
R-factor	0.239
Rwork	0.237
R-free	0.27390
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	6vhh 4xwo
RMSD bond length	0.012
RMSD bond angle	1.563
Data reduction software	XDS
Data scaling software	XDS
Phasing software	PHASER (2.8.3)
Refinement software	PHENIX (1.19.2_4158)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	47.510	2.400
High resolution limit [Å]	2.330	2.330
Rmerge	0.038	7.310
Rmeas	0.054	10.340
Rpim	0.038	7.310
Number of reflections	56710	4563
<I/σ(I)>	9.3	0.1
Completeness [%]	100.0	99.9
Redundancy	1.9	1.9
CC(1/2)	0.990	0.079

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP	4.5	296	100 mM sodium acetate, 150 mM ammonium sulfate, 20% PEG 4000