7ZQV
Structure of the SARS-CoV-2 main protease in complex with AG7404
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-3 |
Synchrotron site | ESRF |
Beamline | MASSIF-3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-08 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 0.96770 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.309, 54.082, 115.011 |
Unit cell angles | 90.00, 100.34, 90.00 |
Refinement procedure
Resolution | 48.840 - 2.260 |
R-factor | 0.19252 |
Rwork | 0.190 |
R-free | 0.24054 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6y2e |
RMSD bond length | 0.006 |
RMSD bond angle | 1.444 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.840 | 2.450 |
High resolution limit [Å] | 2.260 | 2.260 |
Number of reflections | 18801 | 941 |
<I/σ(I)> | 4.5 | |
Completeness [%] | 89.5 | |
Redundancy | 2.5 | |
CC(1/2) | 0.985 | 0.802 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | Sodium chloride, HEPES pH 7 and PEG 3350 |