7X3P
Crystal structure of human SIRT5 in complex with diazirine inhibitor 9
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 198 |
Detector technology | PIXEL |
Collection date | 2019-11-03 |
Detector | DECTRIS PILATUS3 X CdTe 1M |
Wavelength(s) | 0.97919 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 41.332, 65.034, 55.658 |
Unit cell angles | 90.00, 93.58, 90.00 |
Refinement procedure
Resolution | 27.775 - 1.560 |
R-factor | 0.1395 |
Rwork | 0.139 |
R-free | 0.16340 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6eqs |
RMSD bond length | 0.009 |
RMSD bond angle | 1.130 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.6.0) |
Refinement software | PHENIX (1.20.1-4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 55.550 | 1.656 |
High resolution limit [Å] | 1.560 | 1.560 |
Rmeas | 0.676 | 0.676 |
Number of reflections | 41469 | |
<I/σ(I)> | 0.1 | |
Completeness [%] | 96.7 | |
Redundancy | 1.498 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 289 | 23%-27% (v/v) PEG 3350, 0.1 M MES, pH 5.5-6.0, 0.1-0.2 M NaCl |