7WNM
Structure of SARS-CoV-2 Gamma variant receptor-binding domain complexed with high affinity human ACE2 mutant (T27F,R273Q)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL02U1 |
Synchrotron site | SSRF |
Beamline | BL02U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-06-03 |
Detector | DECTRIS EIGER2 X 9M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 103.346, 103.346, 233.324 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 17.570 - 2.700 |
R-factor | 0.1954 |
Rwork | 0.194 |
R-free | 0.22250 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6lzg |
RMSD bond length | 0.003 |
RMSD bond angle | 0.514 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.19rc3_4028) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.800 |
High resolution limit [Å] | 2.700 | 2.700 |
Rmerge | 0.175 | 1.061 |
Rmeas | 0.185 | 1.122 |
Rpim | 0.057 | 0.362 |
Number of reflections | 357147 | 3491 |
<I/σ(I)> | 12.7 | |
Completeness [%] | 99.7 | 100 |
Redundancy | 10 | 9.3 |
CC(1/2) | 0.993 | 0.772 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 291 | 0.1 M magnesium chloride, 0.1 M MES (pH 6.0) and 8% w/v polyethylene glycol 6000 |