Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7W5P

Crystal Structure of the dioxygenase CcTet from Coprinopsis cinereain bound to 12bp N6-methyldeoxyadenine (6mA) containing duplex DNA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL19U1
Synchrotron siteSSRF
BeamlineBL19U1
Temperature [K]100
Detector technologyPIXEL
Collection date2021-05-13
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.9785
Spacegroup nameP 21 21 21
Unit cell lengths104.788, 105.198, 196.717
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.180 - 2.300
R-factor0.2292
Rwork0.228
R-free0.25730
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7vpn
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.340
High resolution limit [Å]2.3006.2402.300
Rmerge0.1110.0840.726
Rmeas0.1160.0880.753
Rpim0.0320.0260.198
Total number of observations1309069
Number of reflections9623950984767
<I/σ(I)>4.4
Completeness [%]99.598.699.8
Redundancy13.612.214.1
CC(1/2)0.9550.863
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.52770.1 M MES, pH 6.5, 20% PEG 8000

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon