7VW5
Crystal structures of alphavirus nonstructural protein 4 (nsP4) reveal an intrinsically dynamic RNA-dependent RNA polymerase fold
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-06-22 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.946 |
Spacegroup name | P 1 |
Unit cell lengths | 67.450, 68.940, 71.420 |
Unit cell angles | 116.31, 107.05, 95.10 |
Refinement procedure
Resolution | 36.270 - 2.300 |
R-factor | 0.1978 |
Rwork | 0.197 |
R-free | 0.24050 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7f0s |
RMSD bond length | 0.002 |
RMSD bond angle | 0.437 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.690 | 45.690 | 2.030 |
High resolution limit [Å] | 1.910 | 5.700 | 1.910 |
Rmerge | 0.074 | 0.026 | 1.658 |
Rmeas | 0.105 | 0.037 | 2.344 |
Total number of observations | 263495 | ||
Number of reflections | 144300 | 5616 | 21199 |
<I/σ(I)> | 6.21 | 23.02 | 0.56 |
Completeness [%] | 87.5 | 89.5 | 79.7 |
Redundancy | 1.826 | 1.894 | 1.741 |
CC(1/2) | 0.995 | 0.998 | 0.561 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.4 | 291 | 18-20% PEG3350, 0.2 M magnesium acetate |