7VRM
crystal structure of BRD2-BD2 in complex with purine derivative
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-08-28 |
Detector | RIGAKU HyPix-6000HE |
Wavelength(s) | 1.54056 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 52.515, 71.823, 32.145 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 25.610 - 1.100 |
R-factor | 0.1678 |
Rwork | 0.167 |
R-free | 0.18030 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5xhk |
RMSD bond length | 0.004 |
RMSD bond angle | 0.798 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.18_3855: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.610 | 1.120 |
High resolution limit [Å] | 1.100 | 1.100 |
Rmerge | 0.068 | 0.339 |
Number of reflections | 48535 | 2015 |
<I/σ(I)> | 23.11 | |
Completeness [%] | 96.0 | 81 |
Redundancy | 3.6 | 2.3 |
CC(1/2) | 1.000 | 0.950 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 300 | PEG MME 2000, 50mM Tris, 50mM NaCl |