7UDP
Crystal structure of COQ8A-CA157 inhibitor complex in space group C2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-12-12 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.033230 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 151.210, 56.379, 48.684 |
Unit cell angles | 90.00, 98.39, 90.00 |
Refinement procedure
Resolution | 37.400 - 2.010 |
R-factor | 0.2427 |
Rwork | 0.240 |
R-free | 0.27940 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5i35 |
Data reduction software | XDS (Mar 15, 2019) |
Data scaling software | XSCALE (Feb 5, 2021) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20.1-4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 37.400 | 37.400 | 2.060 |
High resolution limit [Å] | 2.010 | 8.970 | 2.010 |
Rmerge | 0.034 | 0.025 | 1.560 |
Rmeas | 0.037 | 0.028 | 1.687 |
Total number of observations | 183425 | ||
Number of reflections | 27346 | 332 | 1996 |
<I/σ(I)> | 20.71 | 51.04 | 1.07 |
Completeness [%] | 99.8 | 98.2 | 100 |
Redundancy | 6.708 | 6 | 6.874 |
CC(1/2) | 1.000 | 0.999 | 0.472 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | Crystals were grown in a MRC SD2 plate set by a STP Labtech Mosquito. Protein at 17.89 mg/ml (390 uM) and 500 uM CA157 were inc for 30 min at ambient temp prior to setting the plate. The droplet providing the crystal used for data collection and refinement was 200 nL of protein-CA157 solution and 25 nL reservoir, 0.65 M sodium succinate pH 7, 0.1M HEPPS buffer, pH 8.0. |