7THA
Crystal structure of human transthyretin variant C10A/M13V
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2017-05-22 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 2 21 |
Unit cell lengths | 42.602, 64.509, 85.919 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.870 - 1.750 |
R-factor | 0.1829 |
Rwork | 0.181 |
R-free | 0.21110 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ydm |
RMSD bond length | 0.011 |
RMSD bond angle | 1.670 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.960 | 1.840 |
High resolution limit [Å] | 1.750 | 1.750 |
Rpim | 0.026 | 0.590 |
Number of reflections | 24607 | 3541 |
<I/σ(I)> | 17.3 | 1.6 |
Completeness [%] | 100.0 | |
Redundancy | 7.7 | |
CC(1/2) | 1.000 | 0.730 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | Crystals of TTR C10A/M13V were grown at 23 degrees C using sitting-drop vapor diffusion by mixing 0.2 microliters of 5 mg/mL protein in 50 mM Tris pH 7.8 and 0.2 microliters of a crystallization buffer consisting of 0.19M CaCl2, 5% (v/v) glycerol, 0.095M HEPES pH 7.5, and 26.6% (v/v) PEG 400. Crystals were frozen directly without additional cryo-protection by plunging in liquid nitrogen |