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7SD5

Crystallographic structure of neutralizing antibody 10-40 in complex with SARS-CoV-2 spike receptor binding domain

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-E
Synchrotron siteAPS
Beamline24-ID-E
Temperature [K]100
Detector technologyPIXEL
Collection date2021-07-18
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.979
Spacegroup nameP 21 21 21
Unit cell lengths75.756, 79.845, 118.864
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution59.440 - 1.530
R-factor0.17773
Rwork0.176
R-free0.20625
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7l5b
RMSD bond length0.013
RMSD bond angle1.783
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHENIX
Refinement softwareREFMAC (5.8.0267)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]59.4401.530
High resolution limit [Å]1.5301.530
Rmerge0.045
Number of reflections11188922517
<I/σ(I)>17.5
Completeness [%]97.1
Redundancy7.4
CC(1/2)1.0000.256
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.53100.2 M potassium thiocyanate, 0.1 M sodium acetate, pH 5.5, 8% PEG550 MME, 8% PEG20000

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