7SD5
Crystallographic structure of neutralizing antibody 10-40 in complex with SARS-CoV-2 spike receptor binding domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-18 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 75.756, 79.845, 118.864 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 59.440 - 1.530 |
R-factor | 0.17773 |
Rwork | 0.176 |
R-free | 0.20625 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7l5b |
RMSD bond length | 0.013 |
RMSD bond angle | 1.783 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 59.440 | 1.530 |
High resolution limit [Å] | 1.530 | 1.530 |
Rmerge | 0.045 | |
Number of reflections | 111889 | 22517 |
<I/σ(I)> | 17.5 | |
Completeness [%] | 97.1 | |
Redundancy | 7.4 | |
CC(1/2) | 1.000 | 0.256 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 310 | 0.2 M potassium thiocyanate, 0.1 M sodium acetate, pH 5.5, 8% PEG550 MME, 8% PEG20000 |