7S87
Crystal Structure of Dihydroorotate dehydrogenase from Plasmodium falciparum in complex with Orotate, FMN, and inhibitor NCGC00600348-01
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-E |
Synchrotron site | APS |
Beamline | 21-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-02 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979 |
Spacegroup name | C 2 2 2 |
Unit cell lengths | 124.726, 161.093, 92.569 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 67.500 - 2.750 |
R-factor | 0.1728 |
Rwork | 0.170 |
R-free | 0.23000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6vty |
RMSD bond length | 0.005 |
RMSD bond angle | 0.953 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 98.600 | 2.880 |
High resolution limit [Å] | 2.750 | 2.750 |
Rmerge | 0.132 | 0.653 |
Rmeas | 0.143 | 0.710 |
Rpim | 0.054 | |
Number of reflections | 24145 | 3084 |
<I/σ(I)> | 12.2 | 3.6 |
Completeness [%] | 98.4 | |
Redundancy | 6.8 | 6.6 |
CC(1/2) | 0.995 | 0.847 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.7 | 293 | 0.16 M Ammonium Sulfate, 0.1 M Sodium Acetate, 18% PEG4000, 10 mM DTT. Protein was co-crystallized with 2 mM DHOD, 5 mM NCGC00600348-01. cryo: 25% Glycerol |