7S3P
BD2 domain of human BRD3 bound to Physachenolide C
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-06-12 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 101.448, 158.535, 293.233 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.490 - 2.890 |
R-factor | 0.2084 |
Rwork | 0.207 |
R-free | 0.24020 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2oo1 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.186 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.19_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.490 | 2.993 |
High resolution limit [Å] | 2.890 | 2.890 |
Rmerge | 0.050 | 0.303 |
Rmeas | 0.071 | 0.429 |
Rpim | 0.050 | 0.303 |
Number of reflections | 53287 | 5273 |
<I/σ(I)> | 7.67 | 2.04 |
Completeness [%] | 99.8 | 99.79 |
Redundancy | 2 | 2 |
CC(1/2) | 0.997 | 0.936 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 0.2 M Sodium chloride 0.1 M BIS-TRIS pH 6.5 25% w/v Polyethylene glycol 3,350 |