7QGM
Human CD73 (ecto 5'-nucleotidase) in complex with MRS4598 (a 3-methyl-CMPCP derivative, compound 16 in paper) in the closed state (crystal form III)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-11-29 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9184 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 54.989, 98.185, 234.902 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.980 - 2.900 |
R-factor | 0.2627 |
Rwork | 0.261 |
R-free | 0.29410 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 4h2i |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | BUSTER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.050 | 48.050 | 3.080 |
High resolution limit [Å] | 2.900 | 8.700 | 2.900 |
Rmerge | 0.197 | 0.053 | 3.453 |
Rmeas | 0.206 | 0.055 | 3.594 |
Rpim | 0.059 | 0.016 | 0.990 |
Total number of observations | 175782 | 6395 | 29671 |
Number of reflections | 14569 | 617 | 2307 |
<I/σ(I)> | 8.9 | 31.9 | 0.7 |
Completeness [%] | 99.9 | 99.5 | 99.9 |
Redundancy | 12.1 | 10.4 | 12.9 |
CC(1/2) | 0.998 | 0.998 | 0.649 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 10 mM MRS4598, 10 microM ZnCl2, 10 % PEG 3.350, 0.1 M BisTris pH 5.6, 10 mM MRS4598, 20 % PEG200 |