7PW0
Crystal structure of the c-Src SH3 domain N112G-N113Y-T114N-E115H mutant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-3 |
Synchrotron site | ESRF |
Beamline | MASSIF-3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-11-12 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 0.97924 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 37.259, 93.138, 80.439 |
Unit cell angles | 90.00, 97.25, 90.00 |
Refinement procedure
Resolution | 19.950 - 1.700 |
R-factor | 0.2093 |
Rwork | 0.208 |
R-free | 0.22790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4jz4 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.7) |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.950 | 19.950 | 1.730 |
High resolution limit [Å] | 1.700 | 9.000 | 1.700 |
Rmerge | 0.075 | 0.038 | 1.307 |
Rmeas | 0.085 | 0.044 | 1.497 |
Rpim | 0.040 | 0.021 | 0.721 |
Total number of observations | 255084 | 1499 | 13079 |
Number of reflections | 59211 | 375 | 3116 |
<I/σ(I)> | 9.4 | 27.1 | 1.1 |
Completeness [%] | 99.0 | 87.1 | 98.7 |
Redundancy | 4.3 | 4 | 4.2 |
CC(1/2) | 0.998 | 0.998 | 0.542 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 277 | 1.8 M ammonium sulfate, 5% PEG 300, 10% glycerol, 40mM LiCl, 0.1M AcONa |