7P3S
Crystal structure of Schistosoma mansoni HDAC8 complexed with a benzohydroxamate inhibitor 12
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-11-21 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.006365 |
Spacegroup name | P 1 |
Unit cell lengths | 70.390, 70.390, 97.940 |
Unit cell angles | 78.05, 75.57, 85.69 |
Refinement procedure
Resolution | 46.515 - 1.546 |
R-factor | 0.1703 |
Rwork | 0.169 |
R-free | 0.19340 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4bz5 |
RMSD bond length | 0.006 |
RMSD bond angle | 0.849 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.520 | 1.640 |
High resolution limit [Å] | 1.546 | 1.546 |
Rmerge | 0.057 | 0.477 |
Number of reflections | 235033 | 37886 |
<I/σ(I)> | 7.74 | 1.35 |
Completeness [%] | 90.2 | 89.7 |
Redundancy | 1.9 | 1.9 |
CC(1/2) | 0.997 | 0.575 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.2 M NA,K L-TARTRATE, 21% (W/V) PEG3350 |