7OVG
The C146A variant of an amidase from Pyrococcus horikoshii with bound acetamide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 170 |
Detector technology | PIXEL |
Collection date | 2019-09-20 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 1 |
Unit cell lengths | 44.979, 57.012, 61.358 |
Unit cell angles | 68.09, 85.16, 76.93 |
Refinement procedure
Resolution | 43.850 - 1.650 |
R-factor | 0.1527 |
Rwork | 0.151 |
R-free | 0.18204 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ypa |
RMSD bond length | 0.014 |
RMSD bond angle | 1.626 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.860 | 1.709 |
High resolution limit [Å] | 1.650 | 1.650 |
Rmerge | 0.056 | 0.367 |
Rmeas | 0.065 | 0.444 |
Rpim | 0.035 | 0.246 |
Number of reflections | 53852 | 2008 |
<I/σ(I)> | 11.32 | 2.39 |
Completeness [%] | 81.1 | 30.28 |
Redundancy | 3.4 | 3 |
CC(1/2) | 0.996 | 0.927 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | The crystallization condition is: 5mg/mL protein, 0.1M potassium chloride, 0.2M Sodium formate; 0.2M Ammonium acetate; 0.2M Sodium citrate tribasic dihydrate; 0.2M Sodium potassium tartrate tetrahydrate; 0.1M acetamide; Imidazole; MES monohydrate (acid); 25% v/v MPD; 25% PEG 1000; 25% w/v PEG 3350 |