7O5Z
Human phosphomannomutase 2 (PMM2) with mutation T237M in apo state
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-09 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97926 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 70.934, 70.934, 363.616 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 61.430 - 2.070 |
R-factor | 0.2047 |
Rwork | 0.204 |
R-free | 0.22390 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7o0c |
RMSD bond length | 0.004 |
RMSD bond angle | 0.686 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 61.430 | 2.130 |
High resolution limit [Å] | 2.070 | 2.070 |
Rmerge | 0.134 | 1.600 |
Rpim | 0.034 | 0.422 |
Number of reflections | 34061 | 2617 |
<I/σ(I)> | 15.4 | 1.8 |
Completeness [%] | 98.3 | 100 |
Redundancy | 16.5 | 15.5 |
CC(1/2) | 0.999 | 0.610 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | Drops made by mixing 1 microliter of protein solution and 1 microliter of crystallization deposit solution. Protein solution contained 5 mg/ml protein in 20 mM Hepes pH 7.5 and 0.2 M NaCl. Crystallization solution contained 0.3-0.4 M MgCl2, 24% PEG3350 and 0.1 M HEPES pH 7.5 |