7NZ9
Crystal structure of mouse ADAT2/ADAT3 tRNA deamination complex V128L mutant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-11-23 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.0 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 51.976, 106.814, 129.668 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.380 - 1.990 |
R-factor | 0.1904 |
Rwork | 0.189 |
R-free | 0.21780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3dh1 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.857 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19rc4_4035) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.110 |
High resolution limit [Å] | 1.990 | 1.990 |
Rmerge | 0.136 | 2.440 |
Number of reflections | 50047 | 7853 |
<I/σ(I)> | 15.15 | 1.05 |
Completeness [%] | 99.8 | |
Redundancy | 13.2 | |
CC(1/2) | 0.999 | 0.385 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 18% (W/V) PEG3350, 0.1 M Bis-Tris Propane pH 7.5 and 0.2 M NaBr |