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7NE1

Structure of the complex between Netrin-1 and its receptor Neogenin

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2013-03-20
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97630
Spacegroup nameC 1 2 1
Unit cell lengths150.950, 49.600, 157.250
Unit cell angles90.00, 99.38, 90.00
Refinement procedure
Resolution74.470 - 3.150
R-factor0.214
Rwork0.212
R-free0.23900
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4bq6 1x5i 4plm
RMSD bond length0.007
RMSD bond angle0.890
Data reduction softwarexia2
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareBUSTER (2.10.3)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]77.5703.230
High resolution limit [Å]3.1503.150
Rmerge0.119
Rpim0.118
Number of reflections198171376
<I/σ(I)>6.61
Completeness [%]97.5
Redundancy3.3
CC(1/2)0.9930.336
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP298.150.2 M ammonium nitrate, 20% w/v PEG 3350, 40 mM potassium/sodium tartrate

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