7N8Q
Rhesusized RV305 DH677.3 Fab bound to Clade A/E 93TH057 HIV-1 gp120 core.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-11-29 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 99.182, 82.664, 111.899 |
Unit cell angles | 90.00, 112.02, 90.00 |
Refinement procedure
Resolution | 47.930 - 2.900 |
R-factor | 0.2572 |
Rwork | 0.255 |
R-free | 0.29578 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6mfp |
RMSD bond length | 0.010 |
RMSD bond angle | 1.720 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.950 |
High resolution limit [Å] | 2.900 | 2.900 |
Rmerge | 0.106 | 0.627 |
Rpim | 0.078 | 0.467 |
Number of reflections | 31091 | 1645 |
<I/σ(I)> | 9.6 | 1.1 |
Completeness [%] | 82.7 | 86 |
Redundancy | 2.5 | 2.5 |
CC(1/2) | 0.975 | 0.714 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.5 | 294 | 20% PEG 4000 0.1 M sodium citrate pH 4.5 |