Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

7MS5

Structure of USP5 zinc-finger ubiquitin binding domain co-crystallized with 4-(4-(4-(3,4-difluoro-phenyl)-piperidin-1-ylsulfonyl)-phenyl)-4-oxo-butanoic acid

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E SUPERBRIGHT
Temperature [K]100
Detector technologyCCD
Collection date2019-11-26
DetectorRIGAKU SATURN A200
Wavelength(s)1.54178
Spacegroup nameC 1 2 1
Unit cell lengths61.697, 84.494, 59.642
Unit cell angles90.00, 98.27, 90.00
Refinement procedure
Resolution29.530 - 1.980
R-factor0.184
Rwork0.182
R-free0.21630
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)6nft
RMSD bond length0.010
RMSD bond angle1.405
Data reduction softwareHKL-3000
Data scaling softwareSCALEPACK
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.010
High resolution limit [Å]1.9805.3701.980
Rmerge0.1010.0520.484
Rmeas0.1160.0600.586
Rpim0.0570.0290.322
Total number of observations81870
Number of reflections202061073889
<I/σ(I)>6.9
Completeness [%]95.598.283.5
Redundancy4.142.8
CC(1/2)0.9970.698
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2981 M sodium/potassium phosphate pH 6.9

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon