7MLS
X-ray crystal structure of human BRD4(D1) in complex with 2-(2,5-dibromophenoxy)-6-[4-methyl-1-(piperidin-4-yl)-1H-1,2,3-triazol-5-yl]pyridine (compound 23)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-12-03 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 32.960, 47.496, 79.418 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.460 - 1.260 |
R-factor | 0.1256 |
Rwork | 0.124 |
R-free | 0.14630 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6wgx |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.500 | 47.500 | 1.280 |
High resolution limit [Å] | 1.260 | 6.900 | 1.260 |
Rmerge | 0.045 | 0.058 | 0.082 |
Rmeas | 0.051 | 0.068 | 0.092 |
Rpim | 0.022 | 0.033 | 0.041 |
Total number of observations | 882 | 7246 | |
Number of reflections | 66134 | 207 | 1633 |
<I/σ(I)> | 23.5 | 34.4 | 11.9 |
Completeness [%] | 98.6 | 86 | 97.1 |
Redundancy | 4.7 | 4.3 | 4.4 |
CC(1/2) | 0.994 | 0.962 | 0.992 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | NaI, pH 8.5, Bis-Tris propane, 20% (v/v) PEG 3350, ethylene glycol |