7MFK
Structure of the Clostridium perfringens GH89 in complex with alpha-HNJNAc
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-002 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2012-10-23 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 61 |
Unit cell lengths | 90.610, 90.610, 252.291 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 29.660 - 2.130 |
R-factor | 0.1884 |
Rwork | 0.186 |
R-free | 0.22640 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2vcb |
RMSD bond length | 0.003 |
RMSD bond angle | 0.623 |
Data reduction software | MOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.180 |
High resolution limit [Å] | 2.130 | 2.130 |
Rmerge | 0.112 | 0.434 |
Rmeas | 0.127 | 0.517 |
Rpim | 0.056 | 0.270 |
Number of reflections | 65218 | 4571 |
<I/σ(I)> | 7.5 | 3.4 |
Completeness [%] | 99.8 | |
Redundancy | 4.6 | |
CC(1/2) | 0.987 | 0.769 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 291 | 2.0 M ammonium sulfate, 3% glycerol |