7M5U
Crystal structure of human MPP8 chromodomain in complex with peptidomimetic ligand UNC5246
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-10-23 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1. |
Spacegroup name | P 63 2 2 |
Unit cell lengths | 87.123, 87.123, 57.802 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 34.788 - 2.020 |
R-factor | 0.2164 |
Rwork | 0.216 |
R-free | 0.22830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3lwe |
RMSD bond length | 0.008 |
RMSD bond angle | 0.995 |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 75.450 | 2.070 |
High resolution limit [Å] | 2.020 | 2.020 |
Rmerge | 0.044 | 1.661 |
Rpim | 0.017 | 0.628 |
Number of reflections | 8912 | 637 |
<I/σ(I)> | 28.78 | 1.7 |
Completeness [%] | 99.8 | 100 |
Redundancy | 13.8 | 14.5 |
CC(1/2) | 1.000 | 0.656 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 5.6 | 293 | 100 mM sodium citrate tribasic dihydrate pH 5.6, 100 mM potassium sodium tartrate tetrahydrate, 2.0 M AmSO4 |